Gplots Venn

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Venn diagram generator. Please use it for the creation of area-proportional Venn diagrams for scientific publications and presentations. BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams. New function venn, contributed by Steffen Moeller (Thanks Steffen!) to generate Venn diagrams for up to 5 sets. See?venn for details. Performance of bandplot has been dramatically improved, in part by using runsd and runmean from the caTools package. As a consequence, gplots now depends on the caTools package.

Various R Programming Tools for Plotting Data

Various R programming tools for plotting data, including:- calculating and plotting locally smoothed summary function as('bandplot', 'wapply'),- enhanced versions of standard plots ('barplot2', 'boxplot2','heatmap.2', 'smartlegend'),- manipulating colors ('col2hex', 'colorpanel', 'redgreen','greenred', 'bluered', 'redblue', 'rich.colors'),- calculating and plotting two-dimensional data summaries ('ci2d','hist2d'),- enhanced regression diagnostic plots ('lmplot2', 'residplot'),- formula-enabled interface to 'stats::lowess' function ('lowess'),- displaying textual data in plots ('textplot', 'sinkplot'),- plotting a matrix where each cell contains a dot whose sizereflects the relative magnitude of the elements ('balloonplot'),- plotting 'Venn' diagrams ('venn'),- displaying Open-Office style plots ('ooplot'),- plotting multiple data on same region, with separate axes('overplot'),- plotting means and confidence intervals ('plotCI', 'plotmeans'),- spacing points in an x-y plot so they don't overlap ('space').

Readme

Introduction

This repo is to keep the gplots package alive. I don't plan to develop new features, but if you'll send pull requests I'm willing to review them.

Latest news

Gplots venn set color

You can see the most recent changes to the package in the NEWS.md file

Code of conduct

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

Installation

To install the stable version on CRAN:

And then you may load the package using:

Usage

Gplots Venn Color

TODO

Contact

You are welcome to:

  • Ask questions on: https://stackoverflow.com/questions/tagged/gplots
  • Submit suggestions and bug-reports at: https://github.com/talgalili/gplots/issues
  • Send a pull request on: https://github.com/talgalili/gplots/
  • Compose a friendly e-mail to: tal.galili@gmail.com

Functions in gplots

Name Description
barplot2Enhanced Bar Plots
bandplotPlot x-y Points with Locally Smoothed Mean and Standard Deviation
balloonplotPlot a graphical matrix where each cell contains a dot whose size reflects the relative magnitude of the corresponding component.
angleAxisAdd a Axis to a Plot with Rotated Labels
colorpanelGenerate a smoothly varying set of colors
col2hexConvert color names to hex RGB strings
boxplot2Produce a Boxplot Annotated with the Number of Observations
gplots-defunctDefunct functions
gplots-deprecatedDeprecated functions
ci2dCreate 2-dimensional empirical confidence regions
plotCIPlot Error Bars and Confidence Intervals
plotmeansPlot Group Means and Confidence Intervals
reorder.factorReorder the Levels of a Factor
ooplot.defaultCreate an OpenOffice style plot
overplotPlot multiple variables on the same region, with appropriate axes
qqnorm.aovMakes a half or full normal plot for the effects from an aov model
textplotDisplay text information in a graphics plot.
rtPCRTeratogenesis rtPCR data
rich.colorsRich Color Palettes
spaceSpace points in an x-y plot so they don't overlap.
heatmap.2Enhanced Heat Map
lmplot2Plots to assess the goodness of fit for the linear model objects
hist2dCompute and Plot a 2-Dimensional Histogram
residplotUndocumented functions
vennPlot a Venn diagram
wapplyCompute the Value of a Function Over a Local Region Of An X-Y Plot
lowessScatter Plot Smoothing
sinkplotSend textual R output to a graphics device
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Vignettes of gplots

Name
venn.Rnw
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Details

Gplots Venn Data Frame

VignetteBuilderknitr
Date2020-11-28
LicenseGPL-2
URLhttps://github.com/talgalili/gplots
BugReportshttps://github.com/talgalili/gplots/issues
NeedsCompilationno
Packaged2020-11-28 13:04:00 UTC; talgalili
RepositoryCRAN
Date/Publication2020-11-28 13:50:02 UTC
imports caTools , gtools , KernSmooth , stats
suggests grid , knitr , MASS
depends R (>= 3.0)
ContributorsSteffen Moeller, Bill Venables, Ben Bolker, Thomas Lumley, Marc Schwartz, Lodewijk Bonebakker, Andy Liaw, Arni Magnusson, Robert Gentleman, Martin Maechler, Gregory R. Warnes, Wolfgang Huber

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